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How to create and edit a computational model ?
Table view of the model The table view of the model is composed of one row per model component. For each component are displayed: Its Type: see next paragraph Its ID:…
- updated 12 hrs ago
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- How-To
How to subsample a virtual population?
Subsampling The principle Subsampling is used to select a subset of patients that match a set of constraints. As opposed to a model calibration, here the constraints used are at the population level,…
- updated 5 mths ago
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- How-To
How-to use units?
How and where are units used ? Units are defined for input components of a computational model, namely Parameters, Compartments and Species. There are 4 distinct behaviors when it comes to dealing…
- updated 2 wk ago
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- How-To
How to export references in BibTeX or RIS?
References in jinkō can be downloaded in BibTeX or RIS. This action can be done on a given item, or at a folder level. Export references in BibTeX or RIS.…
- 7 mths ago
- 7
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- How-To
How to read the survival analysis?
The survival analysis module allows to study any quantity of interest defined as time-to-event variable. An example of such a variable can be the time at which a clinical progression happens,…
- updated 7 mths ago
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How to 'Download Results'?
After running a trial, you have the option to download the simulations results in a CSV format. The value of each scalar result associated toa patient, for each arm, will be outputted in this file.…
- 7 mths ago
- 6
- How-To
How to create ‘Rectangular extract’?
Rectangular selections allow users to create an extract from an image, table or graph. Create ‘Rectangular extract’. Click on the ‘Rectangular Highlighter’ button on top of the page,…
- 7 mths ago
- 4
- How-To
How to create ‘Combined extract’?
There are 2 main types of extracts available in jinkō: highlights (to select text) and rectangular selections (to select a figure). Users can associate any type of extract with another one (from a…
- updated 7 mths ago
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- How-To
How-to upload a virtual population?
You can upload your population in jinkō with two different formats (JSON and CSV). This can be done using the create VPOP feature Requirements In both cases (JSON and CSV),…
- 10 mths ago
- 42
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- How-To
How to run a survival analysis on simulation outputs?
The survival analysis module allows to study any quantity of interest defined as time-to-event variable. An example of such a variable can be the time at which a clinical progression happens,…
- 10 mths ago
- 55
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- How-To
How to analyze the contribution of input descriptors on simulation outputs?
The end goal is to assess the contribution of input descriptors on a given quantities of interest (QOI) and get a direction of this contribution. The contributions are computed for some quantities of…
- updated 6 mths ago
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How to visualize results from a trial?
If you want to visualize the results of a trial, you can create a trial visualization, either directly from a trial, and starting from the ‘Create new’ menu: In the trial editor section: From here,…
- updated 1 yr ago
- 35
- How-To
How to add correlations in a vpop design?
When creating a virtual population, you can add correlations to inform the system of known statistical rules about the correlations between pairs of descriptors included in the model.…
- updated 1 yr ago
- 22
- How-To
How to create a document in the platform?
The Document is a a central item on the jinkō platform which offers free form editing capabilities to create many forms of document such as reports, protocols, notebooks, etc.…
- updated 1 yr ago
- 18
- How-To
How to create the Knowledge Model?
The Knowledge Model can be created in jinkō platform thanks to the freeform Document editor. You can create the KM once you are at the Project level and the left side menu allows you to 'Create New'…
- updated 1 yr ago
- 16
- How-To
How to add equations in a document?
Once you have integrated your Computational Model (CM) into the jinkō platform, you can add equations issued from it directly in a Document, in a way to tie scientific discursive knowledge / facts…
- updated 1 yr ago
- 16
- How-To
How to create a research report?
You can can use a Document to create a centralized research report that can be built-upon throughout your project. Making use of the Document freeform capabilities,…
- updated 3 mths ago
- 18
- How-To
How to create a measure
Note: this tutorial assumes that you have already uploaded in jinkō a Computational Mode. Should you not have completed this step, you can refer to the following link:…
- updated 1 yr ago
- 25
- How-To
How to create a protocol?
Note: this tutorial assumes that you have already uploaded in jinkō a Computational Mode. Should you not have completed this step, you can refer to the following link:…
- updated 1 yr ago
- 38
- How-To
How to create a trial?
Note: this tutorial assumes that you have already uploaded in jinkō a Computational Model, and that you have created a Virtual Population. Should you not have completed these 2 steps,…
- updated 1 yr ago
- 33
- How-To
How to create a virtual population?
Once a Computational Model (CM) is imported in jinkō, you can create from it as many virtual populations as needed in order to conduct simulated trials.…
- updated 1 yr ago
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- How-To
How to import scientific sources in a research project?
A Scientific Source is a piece of scientific knowledge that you want to use in your research. You can add it in jinkō, using a DOI or uploading it as a PDF document.…
- updated 1 yr ago
- 23
- How-To

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How-To

How to create and edit a computational model ?

How to subsample a virtual population?

How-to use units?

How to export references in BibTeX or RIS?

How to read the survival analysis?

How to 'Download Results'?

How to create ‘Rectangular extract’?

How to create ‘Combined extract’?

How-to upload a virtual population?

How to run a survival analysis on simulation outputs?

How to analyze the contribution of input descriptors on simulation outputs?

How to visualize results from a trial?

How to add correlations in a vpop design?

How to create a document in the platform?

How to create the Knowledge Model?

How to add equations in a document?

How to create a research report?

How to create a measure

How to create a protocol?

How to create a trial?

How to create a virtual population?

How to import scientific sources in a research project?

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