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How to create and edit a computational model ?
Table view of the model The table view of the model is composed of one row per model component. For each component are displayed: Its Type: see next paragraph Its ID:…
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Import an SBML document in jinkō
You can import SBML models in jinkō following the same instructions as in here except that the document to upload is a valid SBML file. Supported SBML versions Jinkō supports all SBML versions up to…
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How to use units?
How and where are units used ? Units are defined for input components of a computational model, namely Parameters, Compartments and Species. There are 4 distinct behaviors when it comes to dealing…
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How to create a virtual population from a computational model ?
Once a Computational Model (CM) is imported in jinkō, you can create from it as many virtual populations as needed in order to conduct simulated trials.…
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How to upload a virtual population?
You can upload your population in jinkō with two different formats (JSON and CSV). This can be done using the create VPOP feature Requirements In both cases (JSON and CSV),…
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How to subsample a virtual population?
Subsampling The principle Subsampling is used to select a subset of patients that match a set of constraints. As opposed to a model calibration, here the constraints used are at the population level,…
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How to create phase portraits ?
Introduction to Phase Portraits A phase portrait offers a visual representation of the trajectories of a dynamical system within a two-dimensional phase space.…
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How to calibrate a computational model?
Calibration, or parameter estimation, consists in solving the inverse problem of finding descriptors (species, parameters or compartments) values such that the computational model outputs match some…
Learn how to create and edit a model, perform advanced QSP modeling with jinkō